Hello @Steven Beauchem , I'm glad that you were able to resolve your issue and thank you for posting your solution so that others experiencing the same thing can easily reference this! Since the Microsoft Q&A community has a policy that "The question author cannot accept their own answer. They can only accept answers by others ", I'll repost your solution in case you'd like to "Accept " the answer.
Issue: Processing PDF files embedding multiple invoices
Solution: The right approach is to build a Logic Apps pipeline that uses a classification model to identify "multi-invoice" pdf files, and run them thru a sub-flow that extracts the individual invoices into separate pdf files to process through the custom extraction model.
If you have any other questions or are still running into more issues, please let me know.
Thank you again for your time and patience throughout this issue.
Regards,
Vasavi
Please remember to "Accept Answer" if any answer/reply helped, so that others in the community facing similar issues can easily find the solution.